COVID-19 Rapid Call ETL experience in mapping to the OMOP CDM, Istanbul University (CC#1)

Asst Prof Selçuk Şen, Istanbul University, Istanbul Faculty of Medicine, Dept of Medical Pharmacology, explores their experience in mapping COVID-19 clinical data of 59,626 patients from their Oracle system to the OMOP CDM with the technical assistance of the EHDEN COVID-19 ETL Taskforce.

Prof Şen outlines the process from initial workshops and utilising tools such as Rabbit in a Hat, Usagi, the Data Quality Dashboard, and Achilles.

Following the end of the mapping cycle, an inspection report, a series of surveys into the process and an entry into the developing EHDEN Data Partner Catalogue were completed. Finally, next steps and proposals to be involved in relevant network studies are outlined.